NeuroChaT
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Contents:
Neurochat API guide
NeuroChaT Examples
Method Descriptions
neurochat package
Development Roadmap
NeuroChaT Release Notes
NeuroChaT
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Index
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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W
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X
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Y
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__getattr__() (neurochat.nc_control.NeuroChaT method)
(neurochat.nc_data.NData method)
__getitem__() (neurochat.nc_datacontainer.NDataContainer method)
__iter__() (neurochat.nc_datacontainer.NDataContainer method)
__len__() (neurochat.nc_datacontainer.NDataContainer method)
__new__() (neurochat.nc_utils.Singleton static method)
__next__() (neurochat.nc_datacontainer.NDataContainerIterator method)
__repr__() (neurochat.nc_event.NEvent method)
__str__() (neurochat.nc_data.NData method)
(neurochat.nc_datacontainer.NDataContainer method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
(neurochat.nc_spike.NSpike method)
_ang_val (neurochat.nc_spatial.NSpatial attribute)
_border_dist (neurochat.nc_spatial.NSpatial attribute)
_channel_id (neurochat.nc_lfp.NLfp attribute)
_container (neurochat.nc_datacontainer.NDataContainer attribute)
_direction (neurochat.nc_spatial.NSpatial attribute)
_file_names_dict (neurochat.nc_datacontainer.NDataContainer attribute)
_file_tag (neurochat.nc_lfp.NLfp attribute)
_filename (neurochat.nc_hdf.Nhdf attribute)
_fs (neurochat.nc_spatial.NSpatial attribute)
_last_data_pt (neurochat.nc_datacontainer.NDataContainer attribute)
_load_on_fly (neurochat.nc_datacontainer.NDataContainer attribute)
_pos_x (neurochat.nc_spatial.NSpatial attribute)
_pos_y (neurochat.nc_spatial.NSpatial attribute)
_result (neurochat.nc_circular.CircStat attribute)
_results (neurochat.nc_data.NData attribute)
_rho (neurochat.nc_circular.CircStat attribute)
_samples (neurochat.nc_lfp.NLfp attribute)
_share_positions (neurochat.nc_datacontainer.NDataContainer attribute)
_share_stms (neurochat.nc_datacontainer.NDataContainer attribute)
_smoothed_speed (neurochat.nc_datacontainer.NDataContainer attribute)
_speed (neurochat.nc_spatial.NSpatial attribute)
_theta (neurochat.nc_circular.CircStat attribute)
_time (neurochat.nc_spatial.NSpatial attribute)
_timestamp (neurochat.nc_lfp.NLfp attribute)
(neurochat.nc_spike.NSpike attribute)
_unit_count (neurochat.nc_datacontainer.NDataContainer attribute)
_unit_list (neurochat.nc_spike.NSpike attribute)
_unit_no (neurochat.nc_spike.NSpike attribute)
_unit_stamp (neurochat.nc_spike.NSpike attribute)
_unit_Tags (neurochat.nc_spike.NSpike attribute)
_units (neurochat.nc_datacontainer.NDataContainer attribute)
_waveform (neurochat.nc_spike.NSpike attribute)
A
about_nc() (neurochat.nc_ui.NeuroChaT_Ui method)
accumulate_output() (neurochat.nc_ui.NeuroChaT_Ui method)
add_all_files() (neurochat.nc_datacontainer.NDataContainer method)
add_axona_files_from_dir() (neurochat.nc_datacontainer.NDataContainer method)
add_check_box() (in module neurochat.nc_uiutils)
add_combo_box() (in module neurochat.nc_uiutils)
add_data() (neurochat.nc_datacontainer.NDataContainer method)
add_double_spin_box() (in module neurochat.nc_uiutils)
add_files() (neurochat.nc_datacontainer.NDataContainer method)
add_files_from_excel() (neurochat.nc_datacontainer.NDataContainer method)
add_group_box() (in module neurochat.nc_uiutils)
add_items() (neurochat.nc_uigetfiles.UiGetFiles method)
add_label() (in module neurochat.nc_uiutils)
add_lfp() (neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spike.NSpike method)
add_line_edit() (in module neurochat.nc_uiutils)
add_log_box() (in module neurochat.nc_uiutils)
add_node() (neurochat.nc_base.NBase method)
add_push_button() (in module neurochat.nc_uiutils)
add_radio_button() (in module neurochat.nc_uiutils)
add_spike() (neurochat.nc_clust.NClust method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spike.NSpike method)
add_spin_box() (in module neurochat.nc_uiutils)
add_widget() (in module neurochat.nc_uiutils)
addRow() (neurochat.nc_ui.ParamBoxLayout method)
align_wave_peak() (neurochat.nc_clust.NClust method)
analyses (neurochat.nc_config.Configuration attribute)
analysis_mode (neurochat.nc_config.Configuration attribute)
ang_vel_page() (neurochat.nc_ui.UiParameters method)
angle_between_points() (in module neurochat.nc_utils)
angle_calculation() (neurochat.nc_control.NeuroChaT method)
(neurochat.nc_ui.NeuroChaT_Ui method)
angular_velocity() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
append_excel() (neurochat.nc_ui.NeuroChaT_Ui method)
append_selection_to_excel() (neurochat.nc_control.NeuroChaT method)
B
bandpower() (neurochat.nc_lfp.NLfp method)
bandpower_ratio() (neurochat.nc_data.NData method)
(neurochat.nc_lfp.NLfp method)
behaviour_ui() (neurochat.nc_ui.NeuroChaT_Ui method)
(neurochat.nc_ui.UiParameters method)
(neurochat.nc_uigetfiles.UiGetFiles method)
bhatt() (in module neurochat.nc_utils)
border() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
border_page() (neurochat.nc_ui.UiParameters method)
browse_all() (neurochat.nc_ui.NeuroChaT_Ui method)
browse_excel_merge() (neurochat.nc_uimerge.UiMerge method)
browse_lfp() (neurochat.nc_ui.NeuroChaT_Ui method)
browse_spatial() (neurochat.nc_ui.NeuroChaT_Ui method)
browse_spike() (neurochat.nc_ui.NeuroChaT_Ui method)
burst() (neurochat.nc_clust.NClust method)
(neurochat.nc_data.NData method)
(neurochat.nc_spike.NSpike method)
burst_page() (neurochat.nc_ui.UiParameters method)
butter_filter() (in module neurochat.nc_utils)
C
calc_ang_vel() (neurochat.nc_spatial.NSpatial method)
calc_border() (neurochat.nc_spatial.NSpatial method)
calc_stat() (neurochat.nc_circular.CircStat method)
calculate_angular() (neurochat.nc_utils.RecPos method)
calculate_position() (neurochat.nc_utils.RecPos method)
calculate_speed() (neurochat.nc_utils.RecPos method)
cell_type_analysis() (neurochat.nc_ui.NeuroChaT_Ui method)
cell_type_select() (neurochat.nc_ui.NeuroChaT_Ui method)
centre_of_mass() (in module neurochat.nc_utils)
change_names() (neurochat.nc_base.NBase method)
change_stack_page() (neurochat.nc_ui.UiParameters method)
chop_edges() (in module neurochat.nc_utils)
circ_histogram() (neurochat.nc_circular.CircStat method)
circ_regroup() (neurochat.nc_circular.CircStat static method)
circ_scatter() (neurochat.nc_circular.CircStat method)
circ_smooth() (neurochat.nc_circular.CircStat method)
CircStat (class in neurochat.nc_circular)
clear_backend_files() (neurochat.nc_ui.NeuroChaT_Ui method)
clear_files() (neurochat.nc_ui.NeuroChaT_Ui method)
clear_log() (neurochat.nc_ui.NeuroChaT_Ui method)
close() (neurochat.nc_hdf.Nhdf method)
close_dialog() (neurochat.nc_uigetfiles.UiGetFiles method)
close_fig() (neurochat.nc_control.NeuroChaT method)
close_hdf_file() (neurochat.nc_control.NeuroChaT method)
close_pdf() (neurochat.nc_control.NeuroChaT method)
closeEvent() (neurochat.nc_ui.NeuroChaT_Ui method)
cluster_evaluate() (neurochat.nc_control.NeuroChaT method)
(neurochat.nc_ui.NeuroChaT_Ui method)
cluster_separation() (neurochat.nc_clust.NClust method)
cluster_similarity() (neurochat.nc_clust.NClust method)
(neurochat.nc_control.NeuroChaT method)
columnCount() (neurochat.nc_uiutils.PandasModel method)
compare_units() (neurochat.nc_ui.NeuroChaT_Ui method)
config (neurochat.nc_control.NeuroChaT attribute)
Configuration (class in neurochat.nc_config)
convert_to_nwb() (neurochat.nc_control.NeuroChaT method)
(neurochat.nc_ui.NeuroChaT_Ui method)
corr_coeff() (in module neurochat.nc_utils)
count_lfp() (neurochat.nc_base.NBase method)
count_spike() (neurochat.nc_base.NBase method)
count_units_in_bins() (in module neurochat.nc_containeranalysis)
current_filter (neurochat.nc_uigetfiles.UiGetFiles attribute)
D
data() (neurochat.nc_uiutils.PandasModel method)
data_format (neurochat.nc_data.NData attribute)
data_format_select() (neurochat.nc_ui.NeuroChaT_Ui method)
del_lfp() (neurochat.nc_base.NBase method)
del_node() (neurochat.nc_base.NBase method)
del_spike() (neurochat.nc_base.NBase method)
dir_changed() (neurochat.nc_uigetfiles.UiGetFiles method)
dist_rate() (in module neurochat.nc_plot)
distinct_window_rms() (in module neurochat.nc_utils)
done_merge() (neurochat.nc_uigetfiles.UiGetFiles method)
DOWN (neurochat.nc_uigetfiles.UiGetFiles attribute)
E
emit() (neurochat.nc_utils.NLog method)
emitted (neurochat.nc_uiutils.NOut attribute)
evaluate_clusters() (in module neurochat.nc_containeranalysis)
event_trig_average() (neurochat.nc_data.NData method)
(neurochat.nc_lfp.NLfp method)
excel_dir (neurochat.nc_config.Configuration attribute)
execute() (neurochat.nc_control.NeuroChaT method)
exist_hdf_path() (neurochat.nc_control.NeuroChaT method)
exit_nc() (neurochat.nc_ui.NeuroChaT_Ui method)
export_graphic_info() (neurochat.nc_ui.NeuroChaT_Ui method)
export_results() (neurochat.nc_ui.NeuroChaT_Ui method)
extrema() (in module neurochat.nc_utils)
F
f (neurochat.nc_hdf.Nhdf attribute)
fft_psd() (in module neurochat.nc_utils)
file() (neurochat.nc_hdf.Nhdf method)
filename (neurochat.nc_config.Configuration attribute)
files (neurochat.nc_uigetfiles.UiGetFiles attribute)
filter_changed() (neurochat.nc_uigetfiles.UiGetFiles method)
filter_max_speed() (neurochat.nc_utils.RecPos method)
filters (neurochat.nc_uigetfiles.UiGetFiles attribute)
find() (in module neurochat.nc_utils)
find2d() (in module neurochat.nc_utils)
find_artf() (neurochat.nc_lfp.NLfp method)
find_chunk() (in module neurochat.nc_utils)
find_peaks() (in module neurochat.nc_utils)
find_true_ranges() (in module neurochat.nc_utils)
finished (neurochat.nc_control.NeuroChaT attribute)
format (neurochat.nc_config.Configuration attribute)
G
get_all_files_in_dir() (in module neurochat.nc_utils)
get_all_modes() (neurochat.nc_config.Configuration method)
get_analysis() (neurochat.nc_config.Configuration method)
get_analysis_list() (neurochat.nc_config.Configuration method)
get_analysis_mode() (neurochat.nc_config.Configuration method)
get_ang_vel() (neurochat.nc_spatial.NSpatial method)
get_angular_pos() (neurochat.nc_utils.RecPos method)
get_axona_colours() (in module neurochat.nc_utils)
get_border() (neurochat.nc_spatial.NSpatial method)
get_bytes_per_sample() (neurochat.nc_lfp.NLfp method)
(neurochat.nc_spike.NSpike method)
get_bytes_per_timestamp() (neurochat.nc_event.NEvent method)
get_cam_view() (neurochat.nc_utils.RecPos method)
get_cell_type() (neurochat.nc_config.Configuration method)
get_channel_id() (neurochat.nc_lfp.NLfp method)
get_channel_ids() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
get_comments() (neurochat.nc_base.NAbstract method)
get_config_dir() (neurochat.nc_config.Configuration method)
get_config_file() (neurochat.nc_config.Configuration method)
get_configuration() (neurochat.nc_control.NeuroChaT method)
get_data() (neurochat.nc_datacontainer.NDataContainer method)
get_data_at() (neurochat.nc_datacontainer.NDataContainer method)
get_data_dir() (neurochat.nc_config.Configuration method)
get_data_format() (neurochat.nc_config.Configuration method)
(neurochat.nc_data.NData method)
get_data_source() (neurochat.nc_base.NAbstract method)
get_dataset() (neurochat.nc_hdf.Nhdf method)
get_date() (neurochat.nc_base.NAbstract method)
get_direction() (neurochat.nc_spatial.NSpatial method)
get_duration() (neurochat.nc_base.NAbstract method)
(neurochat.nc_spatial.NSpatial method)
get_event_loc() (neurochat.nc_spatial.NSpatial method)
get_event_name() (neurochat.nc_event.NEvent method)
get_event_stamp() (neurochat.nc_event.NEvent method)
get_event_train() (neurochat.nc_event.NEvent method)
get_excel_file() (neurochat.nc_config.Configuration method)
get_experimenter() (neurochat.nc_base.NAbstract method)
get_feat() (neurochat.nc_clust.NClust method)
get_feat_by_unit() (neurochat.nc_clust.NClust method)
get_file_dict() (neurochat.nc_datacontainer.NDataContainer method)
get_file_object() (neurochat.nc_hdf.Nhdf method)
get_file_tag() (neurochat.nc_hdf.Nhdf static method)
(neurochat.nc_lfp.NLfp method)
get_file_version() (neurochat.nc_base.NAbstract method)
get_filename() (neurochat.nc_base.NAbstract method)
(neurochat.nc_hdf.Nhdf method)
get_files() (neurochat.nc_uigetfiles.UiGetFiles method)
get_fullscale_mv() (neurochat.nc_lfp.NLfp method)
(neurochat.nc_spike.NSpike method)
get_graphic_format() (neurochat.nc_config.Configuration method)
get_groups_in_path() (neurochat.nc_hdf.Nhdf method)
get_hdf_groups() (neurochat.nc_control.NeuroChaT method)
get_index_info() (neurochat.nc_datacontainer.NDataContainer method)
get_lfp() (neurochat.nc_base.NBase method)
get_lfp_file() (neurochat.nc_config.Configuration method)
(neurochat.nc_data.NData method)
get_lfp_names() (neurochat.nc_base.NBase method)
get_max_energy_chan() (neurochat.nc_clust.NClust method)
get_max_wave_chan() (neurochat.nc_clust.NClust method)
get_mean_std() (neurochat.nc_circular.CircStat method)
get_min_wave_chan() (neurochat.nc_clust.NClust method)
get_name() (neurochat.nc_base.NAbstract method)
get_name_at_idx() (neurochat.nc_datacontainer.NDataContainer method)
get_neuro_data() (neurochat.nc_control.NeuroChaT method)
get_node() (neurochat.nc_base.NBase method)
get_non_moving_times() (neurochat.nc_spatial.NSpatial method)
get_num_data() (neurochat.nc_datacontainer.NDataContainer method)
get_nwb_file() (neurochat.nc_config.Configuration method)
get_output_files() (neurochat.nc_control.NeuroChaT method)
get_param_list() (neurochat.nc_config.Configuration method)
get_params() (neurochat.nc_config.Configuration method)
get_params_by_analysis() (neurochat.nc_config.Configuration method)
get_pixel_per_metre() (neurochat.nc_utils.RecPos method)
get_pixel_size() (neurochat.nc_spatial.NSpatial method)
get_pos_x() (neurochat.nc_spatial.NSpatial method)
get_pos_y() (neurochat.nc_spatial.NSpatial method)
get_position() (neurochat.nc_utils.RecPos method)
get_raw_pos() (neurochat.nc_utils.RecPos method)
get_rayl_stat() (neurochat.nc_circular.CircStat method)
get_record_info() (neurochat.nc_base.NAbstract method)
get_recording_time() (neurochat.nc_lfp.NLfp method)
get_result() (neurochat.nc_circular.CircStat method)
get_results() (neurochat.nc_base.NAbstract method)
(neurochat.nc_control.NeuroChaT method)
(neurochat.nc_data.NData method)
get_rho() (neurochat.nc_circular.CircStat method)
get_samples() (neurochat.nc_lfp.NLfp method)
get_samples_per_spike() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
get_sampling_rate() (neurochat.nc_clust.NClust method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
(neurochat.nc_spike.NSpike method)
get_source_format() (neurochat.nc_base.NAbstract method)
get_spatial_file() (neurochat.nc_config.Configuration method)
(neurochat.nc_data.NData method)
get_special_analysis() (neurochat.nc_config.Configuration method)
get_speed() (neurochat.nc_spatial.NSpatial method)
(neurochat.nc_utils.RecPos method)
get_spike() (neurochat.nc_base.NBase method)
get_spike_file() (neurochat.nc_config.Configuration method)
(neurochat.nc_data.NData method)
get_spike_names() (neurochat.nc_base.NBase method)
get_system() (neurochat.nc_base.NAbstract method)
get_tag() (neurochat.nc_event.NEvent method)
get_text() (neurochat.nc_uiutils.NLogBox method)
get_theta() (neurochat.nc_circular.CircStat method)
get_time() (neurochat.nc_base.NAbstract method)
(neurochat.nc_spatial.NSpatial method)
get_timebase() (neurochat.nc_clust.NClust method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_spike.NSpike method)
get_timestamp() (neurochat.nc_clust.NClust method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
(neurochat.nc_spike.NSpike method)
get_timestamp_bytes() (neurochat.nc_lfp.NLfp method)
(neurochat.nc_spike.NSpike method)
get_total_channel() (neurochat.nc_lfp.NLfp method)
get_total_channels() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
get_total_samples() (neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
get_total_spikes() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
get_type() (neurochat.nc_base.NAbstract method)
(neurochat.nc_data.NData method)
(neurochat.nc_hdf.Nhdf method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
(neurochat.nc_spike.NSpike method)
get_unit_list() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
get_unit_no() (neurochat.nc_config.Configuration method)
(neurochat.nc_spike.NSpike method)
get_unit_spikes_count() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
get_unit_stamp() (neurochat.nc_spike.NSpike method)
get_unit_stamps_in_ranges() (neurochat.nc_spike.NSpike method)
get_unit_tags() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
get_unit_waves() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
get_units() (neurochat.nc_datacontainer.NDataContainer method)
get_vonmises_stat() (neurochat.nc_circular.CircStat method)
get_wave_energy() (neurochat.nc_clust.NClust method)
get_wave_min() (neurochat.nc_clust.NClust method)
get_wave_pc() (neurochat.nc_clust.NClust method)
get_wave_peaks() (neurochat.nc_clust.NClust method)
get_wave_timestamp() (neurochat.nc_clust.NClust method)
get_waveform() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
get_wavetime() (neurochat.nc_clust.NClust method)
get_window_view() (neurochat.nc_utils.RecPos method)
gradient() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
gradient_page() (neurochat.nc_ui.UiParameters method)
graphic_format (neurochat.nc_config.Configuration attribute)
graphic_format_select() (neurochat.nc_ui.NeuroChaT_Ui method)
grid() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
grid_page() (neurochat.nc_ui.UiParameters method)
H
has_ext() (in module neurochat.nc_utils)
hd_firing() (in module neurochat.nc_plot)
hd_rate() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
hd_rate_ccw() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
hd_rate_page() (neurochat.nc_ui.UiParameters method)
hd_rate_pred() (in module neurochat.nc_plot)
hd_rate_time_lapse() (in module neurochat.nc_plot)
hd_shift() (neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
hd_shuffle() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
hd_shuffle_page() (neurochat.nc_ui.UiParameters method)
hd_spike() (in module neurochat.nc_plot)
hd_spike_time_lapse() (in module neurochat.nc_plot)
hd_time_lapse() (neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
hd_time_lapse_page() (neurochat.nc_ui.UiParameters method)
hd_time_shift() (in module neurochat.nc_plot)
hd_time_shift_page() (neurochat.nc_ui.UiParameters method)
hdf (neurochat.nc_control.NeuroChaT attribute)
(neurochat.nc_data.NData attribute)
head_direction (neurochat.nc_utils.RecPos attribute)
headerData() (neurochat.nc_uiutils.PandasModel method)
hellinger() (in module neurochat.nc_utils)
hierarchy_changed() (neurochat.nc_uigetfiles.UiGetFiles method)
histogram() (in module neurochat.nc_utils)
histogram2d() (in module neurochat.nc_utils)
I
initialize() (neurochat.nc_hdf.Nhdf method)
insert_log() (neurochat.nc_uiutils.NLogBox method)
inter_depend_page() (neurochat.nc_ui.UiParameters method)
interdependence() (neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
isi() (in module neurochat.nc_plot)
(neurochat.nc_clust.NClust method)
(neurochat.nc_data.NData method)
(neurochat.nc_spike.NSpike method)
isi_auto_corr() (neurochat.nc_data.NData method)
isi_corr() (in module neurochat.nc_plot)
(neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
isi_corr_page() (neurochat.nc_ui.UiParameters method)
isi_page() (neurochat.nc_ui.UiParameters method)
item_activated() (neurochat.nc_uigetfiles.UiGetFiles method)
L
largest_waveform() (in module neurochat.nc_plot)
lfp (neurochat.nc_data.NData attribute)
LFP (neurochat.nc_datacontainer.NDataContainer.EFileType attribute)
lfp_chan_getitems() (neurochat.nc_ui.NeuroChaT_Ui method)
lfp_file (neurochat.nc_config.Configuration attribute)
lfp_spectrum() (in module neurochat.nc_plot)
lfp_spectrum_page() (neurochat.nc_ui.UiParameters method)
lfp_spectrum_tr() (in module neurochat.nc_plot)
lfp_spike_causality_page() (neurochat.nc_ui.UiParameters method)
line_edited() (neurochat.nc_uigetfiles.UiGetFiles method)
linfit() (in module neurochat.nc_utils)
list_all_units() (neurochat.nc_datacontainer.NDataContainer method)
load() (neurochat.nc_base.NAbstract method)
(neurochat.nc_clust.NClust method)
(neurochat.nc_data.NData method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
(neurochat.nc_spike.NSpike method)
(neurochat.nc_utils.RecPos method)
load_config() (neurochat.nc_config.Configuration method)
load_lfp() (neurochat.nc_data.NData method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
(neurochat.nc_spike.NSpike method)
load_lfp_Axona() (neurochat.nc_lfp.NLfp method)
load_lfp_Neuralynx() (neurochat.nc_lfp.NLfp method)
load_lfp_NWB() (neurochat.nc_lfp.NLfp method)
load_raw() (neurochat.nc_utils.RecPos method)
load_session() (neurochat.nc_ui.NeuroChaT_Ui method)
load_spatial() (neurochat.nc_data.NData method)
load_spatial_Axona() (neurochat.nc_spatial.NSpatial method)
load_spatial_Neuralynx() (neurochat.nc_spatial.NSpatial method)
load_spatial_NWB() (neurochat.nc_spatial.NSpatial method)
load_spike() (neurochat.nc_clust.NClust method)
(neurochat.nc_data.NData method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
(neurochat.nc_spike.NSpike method)
load_spike_Axona() (neurochat.nc_spike.NSpike method)
load_spike_Neuralynx() (neurochat.nc_spike.NSpike method)
load_spike_NWB() (neurochat.nc_spike.NSpike method)
load_spike_spikeinterface() (neurochat.nc_spike.NSpike method)
loc_auto_corr() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
loc_firing() (in module neurochat.nc_plot)
loc_firing_and_place() (in module neurochat.nc_plot)
loc_place_centroid() (in module neurochat.nc_plot)
loc_place_field() (in module neurochat.nc_plot)
loc_rate() (in module neurochat.nc_plot)
loc_rate_page() (neurochat.nc_ui.UiParameters method)
loc_rate_time_lapse() (in module neurochat.nc_plot)
loc_rot_corr() (neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
loc_shift() (neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
loc_shuffle() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
loc_shuffle_page() (neurochat.nc_ui.UiParameters method)
loc_spike() (in module neurochat.nc_plot)
loc_spike_time_lapse() (in module neurochat.nc_plot)
loc_time_lapse() (neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
loc_time_lapse_page() (neurochat.nc_ui.UiParameters method)
loc_time_shift() (in module neurochat.nc_plot)
loc_time_shift_page() (neurochat.nc_ui.UiParameters method)
log (neurochat.nc_control.NeuroChaT attribute)
log_exception() (in module neurochat.nc_utils)
M
make_dir_if_not_exists() (in module neurochat.nc_utils)
menu_ui() (neurochat.nc_ui.NeuroChaT_Ui method)
merge_files() (neurochat.nc_uimerge.UiMerge method)
merge_output() (neurochat.nc_ui.NeuroChaT_Ui method)
mode() (neurochat.nc_control.NeuroChaT method)
mode_id (neurochat.nc_config.Configuration attribute)
mode_select() (neurochat.nc_ui.NeuroChaT_Ui method)
modify_excel_row() (neurochat.nc_control.NeuroChaT method)
move_items() (neurochat.nc_uigetfiles.UiGetFiles method)
multiple_regression() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
multiple_regression_page() (neurochat.nc_ui.UiParameters method)
N
NAbstract (class in neurochat.nc_base)
NBase (class in neurochat.nc_base)
NClust (class in neurochat.nc_clust)
NData (class in neurochat.nc_data)
ndata (neurochat.nc_control.NeuroChaT attribute)
NDataContainer (class in neurochat.nc_datacontainer)
NDataContainer.EFileType (class in neurochat.nc_datacontainer)
NDataContainerIterator (class in neurochat.nc_datacontainer)
NeuroChaT (class in neurochat.nc_control)
neurochat (module)
neurochat.nc_base (module)
neurochat.nc_circular (module)
neurochat.nc_clust (module)
neurochat.nc_config (module)
neurochat.nc_containeranalysis (module)
neurochat.nc_control (module)
neurochat.nc_data (module)
neurochat.nc_datacontainer (module)
neurochat.nc_defaults (module)
neurochat.nc_event (module)
neurochat.nc_hdf (module)
neurochat.nc_lfp (module)
neurochat.nc_plot (module)
neurochat.nc_spatial (module)
neurochat.nc_spike (module)
neurochat.nc_ui (module)
neurochat.nc_uigetfiles (module)
neurochat.nc_uimerge (module)
neurochat.nc_uiutils (module)
neurochat.nc_utils (module)
NeuroChaT_Ui (class in neurochat.nc_ui)
NEvent (class in neurochat.nc_event)
Nhdf (class in neurochat.nc_hdf)
NLfp (class in neurochat.nc_lfp)
NLog (class in neurochat.nc_utils)
NLogBox (class in neurochat.nc_uiutils)
non_moving_periods() (neurochat.nc_spatial.NSpatial method)
NOut (class in neurochat.nc_uiutils)
NSpatial (class in neurochat.nc_spatial)
NSpike (class in neurochat.nc_spike)
nwb_file (neurochat.nc_config.Configuration attribute)
nxl_write() (in module neurochat.nc_utils)
O
open_hdf_file() (neurochat.nc_control.NeuroChaT method)
open_pdf() (neurochat.nc_control.NeuroChaT method)
P
PandasModel (class in neurochat.nc_uiutils)
ParamBoxLayout (class in neurochat.nc_ui)
parameters (neurochat.nc_config.Configuration attribute)
parent (neurochat.nc_uigetfiles.UiGetFiles attribute)
path_exists() (neurochat.nc_hdf.Nhdf method)
phase_at_events() (neurochat.nc_lfp.NLfp method)
phase_at_spikes() (neurochat.nc_data.NData method)
phase_dist() (neurochat.nc_data.NData method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spike.NSpike method)
phase_lock_page() (neurochat.nc_ui.UiParameters method)
place() (neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
place_cell_plots() (neurochat.nc_control.NeuroChaT method)
(neurochat.nc_ui.NeuroChaT_Ui method)
place_cell_summary() (in module neurochat.nc_containeranalysis)
place_field() (neurochat.nc_spatial.NSpatial static method)
place_field_centroid() (neurochat.nc_spatial.NSpatial static method)
plot_angle_between_points() (in module neurochat.nc_plot)
plot_data_to_hdf() (neurochat.nc_control.NeuroChaT method)
plv() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spike.NSpike method)
plv_bs() (in module neurochat.nc_plot)
plv_tr() (in module neurochat.nc_plot)
pos_file (neurochat.nc_utils.RecPos attribute)
Position (neurochat.nc_datacontainer.NDataContainer.EFileType attribute)
print_place_cells() (in module neurochat.nc_plot)
psth() (neurochat.nc_clust.NClust method)
(neurochat.nc_event.NEvent method)
(neurochat.nc_spike.NSpike method)
R
raw_position (neurochat.nc_utils.RecPos attribute)
RecPos (class in neurochat.nc_utils)
remove_extension() (in module neurochat.nc_utils)
remove_items() (neurochat.nc_uigetfiles.UiGetFiles method)
remove_null_chan() (neurochat.nc_clust.NClust method)
remove_recordings_units() (neurochat.nc_datacontainer.NDataContainer method)
resample_wave() (neurochat.nc_clust.NClust method)
resample_wavetime() (neurochat.nc_clust.NClust method)
reset() (neurochat.nc_control.NeuroChaT method)
reset_results() (neurochat.nc_base.NAbstract method)
(neurochat.nc_data.NData method)
residual_stat() (in module neurochat.nc_utils)
resolve_analysis_path() (neurochat.nc_hdf.Nhdf method)
resolve_datapath() (neurochat.nc_hdf.Nhdf method)
resolve_hdfname() (neurochat.nc_hdf.Nhdf static method)
restore_start_button() (neurochat.nc_ui.NeuroChaT_Ui method)
retranslate_ui() (neurochat.nc_ui.NeuroChaT_Ui method)
rot_2d() (in module neurochat.nc_utils)
rot_corr() (in module neurochat.nc_plot)
rowCount() (neurochat.nc_uiutils.PandasModel method)
run() (neurochat.nc_control.NeuroChaT method)
S
save_attributes() (neurochat.nc_hdf.Nhdf method)
save_cluster() (neurochat.nc_hdf.Nhdf method)
save_config() (neurochat.nc_config.Configuration method)
save_dataset() (neurochat.nc_hdf.Nhdf method)
save_dict_recursive() (neurochat.nc_hdf.Nhdf method)
save_in_merge() (neurochat.nc_uimerge.UiMerge method)
save_lfp() (neurochat.nc_hdf.Nhdf method)
save_log() (neurochat.nc_ui.NeuroChaT_Ui method)
save_object() (neurochat.nc_hdf.Nhdf method)
save_session() (neurochat.nc_ui.NeuroChaT_Ui method)
save_spatial() (neurochat.nc_hdf.Nhdf method)
save_spike() (neurochat.nc_hdf.Nhdf method)
save_to_hdf5() (neurochat.nc_base.NAbstract method)
(neurochat.nc_clust.NClust method)
(neurochat.nc_data.NData method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
(neurochat.nc_spike.NSpike method)
scatterplot_matrix() (in module neurochat.nc_plot)
ScrollableWidget (class in neurochat.nc_uiutils)
select_all() (neurochat.nc_ui.NeuroChaT_Ui method)
select_analysis_ui() (neurochat.nc_ui.NeuroChaT_Ui method)
select_cell_type_ui() (neurochat.nc_ui.NeuroChaT_Ui method)
select_files_merge() (neurochat.nc_uimerge.UiMerge method)
selectGraphicFormatUi() (neurochat.nc_ui.NeuroChaT_Ui method)
set_analysis() (neurochat.nc_config.Configuration method)
set_analysis_mode() (neurochat.nc_config.Configuration method)
set_ang_vel() (neurochat.nc_spatial.NSpatial method)
set_backend() (in module neurochat.nc_plot)
set_border() (neurochat.nc_spatial.NSpatial method)
set_cell_type() (neurochat.nc_config.Configuration method)
set_channel_id() (neurochat.nc_lfp.NLfp method)
set_config_dir() (neurochat.nc_config.Configuration method)
set_config_file() (neurochat.nc_config.Configuration method)
set_configuration() (neurochat.nc_control.NeuroChaT method)
set_curr_name() (neurochat.nc_event.NEvent method)
set_curr_tag() (neurochat.nc_event.NEvent method)
set_data() (neurochat.nc_ui.UiResults method)
set_data_dir() (neurochat.nc_config.Configuration method)
set_data_format() (neurochat.nc_config.Configuration method)
(neurochat.nc_data.NData method)
set_default() (neurochat.nc_ui.UiResults method)
(neurochat.nc_uimerge.UiMerge method)
set_description() (neurochat.nc_base.NAbstract method)
set_event() (neurochat.nc_spatial.NSpatial method)
set_event_filename() (neurochat.nc_spatial.NSpatial method)
set_event_name() (neurochat.nc_spatial.NSpatial method)
set_excel_file() (neurochat.nc_config.Configuration method)
set_file() (neurochat.nc_utils.RecPos method)
set_file_tag() (neurochat.nc_lfp.NLfp method)
set_filename() (neurochat.nc_base.NAbstract method)
(neurochat.nc_hdf.Nhdf method)
set_graphic_format() (neurochat.nc_config.Configuration method)
set_lfp() (neurochat.nc_spatial.NSpatial method)
set_lfp_chan() (neurochat.nc_ui.NeuroChaT_Ui method)
set_lfp_file() (neurochat.nc_config.Configuration method)
(neurochat.nc_data.NData method)
set_lfp_file_names() (neurochat.nc_base.NBase method)
set_lfp_filename() (neurochat.nc_spatial.NSpatial method)
set_lfp_name() (neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
set_lfp_names() (neurochat.nc_base.NBase method)
set_loc_rate_filter() (neurochat.nc_ui.UiParameters method)
set_name() (neurochat.nc_base.NAbstract method)
set_neuro_data() (neurochat.nc_control.NeuroChaT method)
set_node_file_names() (neurochat.nc_base.NBase method)
set_nwb_file() (neurochat.nc_config.Configuration method)
set_param() (neurochat.nc_config.Configuration method)
set_parameters() (neurochat.nc_ui.NeuroChaT_Ui method)
set_pixel_size() (neurochat.nc_spatial.NSpatial method)
set_record_info() (neurochat.nc_base.NAbstract method)
set_rho() (neurochat.nc_circular.CircStat method)
set_spat_corr_filter() (neurochat.nc_ui.UiParameters method)
set_spatial_file() (neurochat.nc_config.Configuration method)
(neurochat.nc_data.NData method)
set_spatial_name() (neurochat.nc_data.NData method)
set_special_analysis() (neurochat.nc_config.Configuration method)
set_spike() (neurochat.nc_spatial.NSpatial method)
set_spike_file() (neurochat.nc_config.Configuration method)
(neurochat.nc_data.NData method)
set_spike_file_names() (neurochat.nc_base.NBase method)
set_spike_filename() (neurochat.nc_spatial.NSpatial method)
set_spike_name() (neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
set_spike_names() (neurochat.nc_base.NBase method)
set_system() (neurochat.nc_base.NAbstract method)
(neurochat.nc_spatial.NSpatial method)
set_theta() (neurochat.nc_circular.CircStat method)
set_timebase() (neurochat.nc_event.NEvent method)
set_unit_no() (neurochat.nc_config.Configuration method)
(neurochat.nc_data.NData method)
(neurochat.nc_spike.NSpike method)
(neurochat.nc_ui.NeuroChaT_Ui method)
set_unit_tags() (neurochat.nc_clust.NClust method)
(neurochat.nc_spike.NSpike method)
set_units() (neurochat.nc_datacontainer.NDataContainer method)
setContents() (neurochat.nc_uiutils.ScrollableWidget method)
setup() (neurochat.nc_datacontainer.NDataContainer method)
(neurochat.nc_utils.NLog method)
setup_ui() (neurochat.nc_ui.NeuroChaT_Ui method)
(neurochat.nc_ui.UiParameters method)
(neurochat.nc_ui.UiResults method)
(neurochat.nc_uigetfiles.UiGetFiles method)
(neurochat.nc_uimerge.UiMerge method)
sharp_wave_ripples() (neurochat.nc_lfp.NLfp method)
shift_spike_times() (neurochat.nc_spike.NSpike method)
shuffle_spike_times() (neurochat.nc_spike.NSpike method)
Singleton (class in neurochat.nc_utils)
skaggs_info() (neurochat.nc_spatial.NSpatial static method)
smooth_1d() (in module neurochat.nc_utils)
smooth_2d() (in module neurochat.nc_utils)
smooth_direction() (neurochat.nc_spatial.NSpatial method)
smooth_speed() (neurochat.nc_spatial.NSpatial method)
sort_units_spatially() (neurochat.nc_datacontainer.NDataContainer method)
sortingextractor_to_nwb() (neurochat.nc_control.NeuroChaT static method)
spatial (neurochat.nc_data.NData attribute)
spatial_corr_page() (neurochat.nc_ui.UiParameters method)
spatial_file (neurochat.nc_config.Configuration attribute)
spatial_sparsity() (neurochat.nc_spatial.NSpatial static method)
special_analysis (neurochat.nc_config.Configuration attribute)
spectrum() (neurochat.nc_data.NData method)
(neurochat.nc_lfp.NLfp method)
speed (neurochat.nc_utils.RecPos attribute)
speed() (in module neurochat.nc_plot)
(neurochat.nc_data.NData method)
(neurochat.nc_spatial.NSpatial method)
speed_page() (neurochat.nc_ui.UiParameters method)
spike (neurochat.nc_clust.NClust attribute)
(neurochat.nc_data.NData attribute)
Spike (neurochat.nc_datacontainer.NDataContainer.EFileType attribute)
spike_file (neurochat.nc_config.Configuration attribute)
spike_lfp_causality() (neurochat.nc_data.NData method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spike.NSpike method)
spike_phase() (in module neurochat.nc_plot)
spike_phase_page() (neurochat.nc_ui.UiParameters method)
spike_positions() (in module neurochat.nc_containeranalysis)
spike_raster() (in module neurochat.nc_plot)
spike_times() (in module neurochat.nc_containeranalysis)
stair_plot() (in module neurochat.nc_plot)
start() (neurochat.nc_ui.NeuroChaT_Ui method)
(neurochat.nc_uimerge.UiMerge method)
static_vars() (in module neurochat.nc_utils)
STM (neurochat.nc_datacontainer.NDataContainer.EFileType attribute)
string_repr() (neurochat.nc_datacontainer.NDataContainer method)
subsample() (neurochat.nc_data.NData method)
(neurochat.nc_datacontainer.NDataContainer method)
(neurochat.nc_lfp.NLfp method)
(neurochat.nc_spatial.NSpatial method)
(neurochat.nc_spike.NSpike method)
T
theta_cell() (in module neurochat.nc_plot)
theta_cell_page() (neurochat.nc_ui.UiParameters method)
theta_index() (neurochat.nc_data.NData method)
(neurochat.nc_spike.NSpike method)
theta_skip_cell_page() (neurochat.nc_ui.UiParameters method)
theta_skip_index() (neurochat.nc_data.NData method)
(neurochat.nc_spike.NSpike method)
tutorial() (neurochat.nc_ui.NeuroChaT_Ui method)
U
UiGetFiles (class in neurochat.nc_uigetfiles)
UiMerge (class in neurochat.nc_uimerge)
UiParameters (class in neurochat.nc_ui)
UiResults (class in neurochat.nc_ui)
unit_getitems() (neurochat.nc_ui.NeuroChaT_Ui method)
unit_no (neurochat.nc_config.Configuration attribute)
UP (neurochat.nc_uigetfiles.UiGetFiles attribute)
update_list() (neurochat.nc_uigetfiles.UiGetFiles method)
update_log() (neurochat.nc_ui.NeuroChaT_Ui method)
update_result() (neurochat.nc_base.NAbstract method)
update_results() (neurochat.nc_control.NeuroChaT method)
(neurochat.nc_data.NData method)
V
verify_units() (neurochat.nc_control.NeuroChaT method)
(neurochat.nc_ui.NeuroChaT_Ui method)
view_api() (neurochat.nc_ui.NeuroChaT_Ui method)
view_help() (neurochat.nc_ui.NeuroChaT_Ui method)
W
wave_property() (in module neurochat.nc_plot)
(neurochat.nc_clust.NClust method)
(neurochat.nc_data.NData method)
(neurochat.nc_spike.NSpike method)
waveform_page() (neurochat.nc_ui.UiParameters method)
window_rms() (in module neurochat.nc_utils)
write() (neurochat.nc_uiutils.NOut method)
X
x (neurochat.nc_utils.RecPos attribute)
xlt_from_utf8() (in module neurochat.nc_uiutils)
Y
y (neurochat.nc_utils.RecPos attribute)