NeuroChaT - Neuron Characterisation Toolbox¶

NeuroChaT (RRID:SCR_018020) is an open-source neuron characterisation toolbox. It is described in our paper on Wellcome Open Research.

Installation¶

To install NeuroChaT from PyPi, run the following

python -m pip install -u neurochat

Alternatively, to develop with NeuroChaT

git clone https://github.com/seankmartin/NeuroChaT
cd NeuroChaT
pip install -e .

Authors¶

Md Nurul Islam, Sean K. Martin, Shane M. O’Mara, and John P. Aggleton.

Contact¶

Feel free to email us, or pop a message into our Gitter channel.

Contributing¶

We are open to contributions and would greatly appreciate any input. Please format your code before submitting a pull request. autopep8 has been run on neurochat. You can run this before contributing by the following:

pip install autopep8
python -m autopep8 -r -i neurochat

Getting started¶

The best ways to get started with NeuroChaT are:

For using the UI, download the executable file for Windows and check out the user manual. For using the Python Code, check out the introductory notebook, and examples on this website and other examples on GitHub. Additionally, Sample hdf5 datasets and results are stored on OSF. We are open to collaborators, questions, etc. so feel free to get in touch!

Contents:

Index¶

Index